PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1236s00010.1
Common NameLR48_Vigan05g081300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 168aa    MW: 18921.2 Da    PI: 7.0022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1236s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126788122
                      EEETTTTEEESSHHHHHHHHHH CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                      y+C+ C k F++   L  H+++
  Vang1236s00010.1 67 YTCSFCRKEFKSAQALGGHMNR 88
                      9***************999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-56786IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRNNFMKDY THTCANNNPS KDFTHVVNCY NNKQNQMAKD LWECSTNSHS NADQDYVNGF  60
PWPPRSYTCS FCRKEFKSAQ ALGGHMNRWV LVDGILLNPL STNTPEPAKS KISESLSAGA  120
GEYDHAFARE DGCTVLKKGE ILRMDLEIGL PRTYDLDLEL RLGTTYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1236s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-144AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424683.18e-61PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0L9UKX12e-59A0A0L9UKX1_PHAAN; Uncharacterized protein
STRINGXP_007149575.18e-52(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-17C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]