PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g17430.2
Common NameLR48_Vigan01g309200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 345aa    MW: 38439 Da    PI: 4.9098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g17430.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-184896355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Vang11g17430.2 48 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 96
                    56******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-3247110IPR001471AP2/ERF domain
CDDcd000181.09E-2747103No hitNo description
PROSITE profilePS5103220.54747104IPR001471AP2/ERF domain
PRINTSPR003671.3E-74859IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-2848104IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2048105IPR016177DNA-binding domain
PfamPF008472.9E-115096IPR001471AP2/ERF domain
PRINTSPR003671.3E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSTSRTSDTP FKGYDPNQTQ MCLSLLQRNT SPSGERRGRR KQAEPGRFLG VRRRPWGRYA  60
AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGNQAR TNFVYSDNIN FHTILSPADV  120
QVQLQLQPLL PPSQFLSNTT HTKQPNNQNS LPKVVHTSNT GNPSPLNNDA FVEIETTYGS  180
ADQDDSFFFS SDSNSGYLEC IVPDNCFRPA SSRTNSSNSR KSNVSDQKAN TNSSESTNHH  240
EQYYYSQEMA GMASNFSEFC YPSEVMSQGS WDDQQSWDWN CSELSAIFKN PLRVENGCMD  300
ALYPMSDDQS PSPSYGVMNE CASSTTCSPS LPPFGDVDLG YPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2038110578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g17430.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434399.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q22e-58ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A0L9TSR30.0A0A0L9TSR3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9220.0A0A0S3R922_PHAAN; Uncharacterized protein
STRINGXP_007154243.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-51ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Chandler JW,Werr W
    DORNRĂ–SCHEN, DORNRĂ–SCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  4. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]