PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g17410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 540aa    MW: 57048.9 Da    PI: 8.075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g17410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-1286111227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C +++rtG+C yG rC+F+H++
  Vang11g17410.1  86 DEADCIYYLRTGFCGYGTRCRFNHPR 111
                     6799********************96 PP

2zf-CCCH37.73.3e-12148172327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  Vang11g17410.1 148 QPVCQYYMRTGSCKFGASCKYHHPR 172
                     689********************96 PP

3zf-CCCH34.92.6e-11194218327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++ +tG+Ck+G++CkF+H++
  Vang11g17410.1 194 EKECSYYVKTGQCKFGATCKFHHPQ 218
                     679********************97 PP

4zf-CCCH37.53.8e-12359384227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G++C+++H+p
  Vang11g17410.1 359 DQPECHYYMKTGECKFGPSCRYHHPP 384
                     689*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-484111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.85484112IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-986111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-687113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-590111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.779145173IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-7145172IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10148172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6148173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5150172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324191219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6192219IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5193218IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-9194218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4197217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577357385IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5357384IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9359384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6360385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4363383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MERYGRASEG SQSDPSPEWT VAGADAGIEG DSIYIICYSF HDSRFALNNA ECGNNGSRFD  60
LDFANNAESS WQHGLAAAES YPLRPDEADC IYYLRTGFCG YGTRCRFNHP RDRAACVSPI  120
SPLILALCSS VIGAAARTGG EFPERVGQPV CQYYMRTGSC KFGASCKYHH PRQAAGNATP  180
VPLNYYGYPL RVGEKECSYY VKTGQCKFGA TCKFHHPQPA GVQVIAPSPV PAVSHLPVPV  240
PSPVYPTVQP QSGPSQQQYG VLVARPPMLP GSVVQGPYGP MVVSPAMVPF SGWGPYQAPA  300
TTPVMPSSSA SNVGSTQLYG ITPLPSSAAT FTGPYQPSGS SVGPSGAIQK EHPFPERPDQ  360
PECHYYMKTG ECKFGPSCRY HHPPDKGAPK ANVILSPVGL PLRPNRIHVG LYIMHSCWTT  420
LYNIHYKCAS GSFFRFSYSP SASSLADMPV APYPVGSSIG TLAPSSSSSE LRPELGAGVS  480
KESVSSRMSS MSTSTGSVGL TLSSVGPISH SSTQPSAQSS SSSATTSATT SSTVSHTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g17410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510178.10.0zinc finger CCCH domain-containing protein 34
TrEMBLA0A0L9TSM40.0A0A0L9TSM4_PHAAN; Uncharacterized protein
STRINGXP_007154244.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-120C3H family protein