PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g16790.2
Common NameLR48_Vigan01g301100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 123aa    MW: 13564.3 Da    PI: 10.862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g16790.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000191638123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C +C + F+++  L  H++ H
  Vang11g16790.2 16 FHCRYCRRQFTNSQALGGHQNAH 38
                    78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5342IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.89E-71243No hitNo description
PROSITE profilePS5015711.4681643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
LNLKAAIAGE DGAKRFHCRY CRRQFTNSQA LGGHQNAHRR ERAKLAQFKY LLNLRQQHGH  60
RFKAPYNNGP KGCLVPHPNS SPNVSVGSAT SAALFQFHGA GTLLQQVPAR DHDVDVDLNL  120
RL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g16790.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419938.17e-86PREDICTED: zinc finger protein 6-like
TrEMBLA0A0L9TSF69e-85A0A0L9TSF6_PHAAN; Uncharacterized protein (Fragment)
STRINGXP_007154344.12e-59(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-11C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]