PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g11080.2
Common NameLR48_Vigan01g274600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 539aa    MW: 59380.2 Da    PI: 6.9581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g11080.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00082451473123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k+F++   L  H r+H
  Vang11g11080.2 451 HECPICLKVFPSGQALGGHKRSH 473
                     79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0847294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5547299IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-87394No hitNo description
PfamPF139121.7E-67496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-8357384No hitNo description
PfamPF139123.2E-12362386IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.284362389IPR007087Zinc finger, C2H2
SMARTSM003550.056362384IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280364384IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995451473IPR007087Zinc finger, C2H2
PfamPF139122.2E-13451474IPR007087Zinc finger, C2H2
SMARTSM003550.071451473IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280453473IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
LGGHMRSHIT NLSSEEKEKL PTRKLFSSSL NNDGDKDSEA AATNAGYGLR ENPKKTWRIS  60
DHSSEDALVF DKFCKECGKA FHSWKALFGH MKCHSEKERA SDSLEDQDSW TNAKVVMDSQ  120
SDNEATAPNK RRRSKRRTRY TVASAAATSS VVSFANPSSS LSEVEQEQEE VAMSLMMLSR  180
DVSPWSGPHS VAESSDNNSA YFEARSSVRT NLVAKFDGST DFTPNTARMI KQSDNKWEVG  240
NSENPSSIRG KSSQRLTTTA ATVETTEHGF GANKSGVSSK GYEKVNNSEL QYVSALEDSE  300
GERGRSRVNE PESILSKSAA TGNKYNSIKT KLIGSELKSN KNWVDKASEP ESSKNSHKRG  360
KFECTTCNKT FHSYQALGGH RASHKKIKGC FASKNESSEN SIETDLSPDP ITTEHKLVNN  420
TDREYLGEHQ QGAGFHDEVE TVTESKKSKG HECPICLKVF PSGQALGGHK RSHMTGGSES  480
RNFQTVVLQE PVAEIRDFLD LNLPAATEEE SNSHADSNRP WWVVQDNHKQ EALVGLIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128135NKRRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g11080.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427270.10.0PREDICTED: uncharacterized protein LOC108335682
TrEMBLA0A0L9TRM10.0A0A0L9TRM1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7C80.0A0A0S3R7C8_PHAAN; Uncharacterized protein
STRINGXP_007155253.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-28C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]