PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g11080.1
Common NameLR48_Vigan01g274600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 564aa    MW: 62212.5 Da    PI: 7.0757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g11080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087476498123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k+F++   L  H r+H
  Vang11g11080.1 476 HECPICLKVFPSGQALGGHKRSH 498
                     79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.88E-5835No hitNo description
SMARTSM003550.381133IPR015880Zinc finger, C2H2-like
PfamPF139120.00591133IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7851133IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SMARTSM003550.08497119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55497124IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-898119No hitNo description
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139121.8E-699121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-8382409No hitNo description
PROSITE profilePS5015710.284387414IPR007087Zinc finger, C2H2
SMARTSM003550.056387409IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-12387411IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
SMARTSM003550.071476498IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-13476499IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995476498IPR007087Zinc finger, C2H2
PROSITE patternPS000280478498IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MEGDQIQEFK HACKFCGKCF PCGRSLGGHM RSHITNLSSE EKEKLPTRKL FSSSLNNDGD  60
KDSEAAATNA GYGLRENPKK TWRISDHSSE DALVFDKFCK ECGKAFHSWK ALFGHMKCHS  120
EKERASDSLE DQDSWTNAKV VMDSQSDNEA TAPNKRRRSK RRTRYTVASA AATSSVVSFA  180
NPSSSLSEVE QEQEEVAMSL MMLSRDVSPW SGPHSVAESS DNNSAYFEAR SSVRTNLVAK  240
FDGSTDFTPN TARMIKQSDN KWEVGNSENP SSIRGKSSQR LTTTAATVET TEHGFGANKS  300
GVSSKGYEKV NNSELQYVSA LEDSEGERGR SRVNEPESIL SKSAATGNKY NSIKTKLIGS  360
ELKSNKNWVD KASEPESSKN SHKRGKFECT TCNKTFHSYQ ALGGHRASHK KIKGCFASKN  420
ESSENSIETD LSPDPITTEH KLVNNTDREY LGEHQQGAGF HDEVETVTES KKSKGHECPI  480
CLKVFPSGQA LGGHKRSHMT GGSESRNFQT VVLQEPVAEI RDFLDLNLPA ATEEESNSHA  540
DSNRPWWVVQ DNHKQEALVG LIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160NKRRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g11080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427270.10.0PREDICTED: uncharacterized protein LOC108335682
TrEMBLA0A0L9TRM10.0A0A0L9TRM1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7C80.0A0A0S3R7C8_PHAAN; Uncharacterized protein
STRINGXP_007155253.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-31C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]