PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g10740.1

Common Name

LR48_Vigan01g271500

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 330aa MW: 36023.1 Da PI: 6.9407

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g10740.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	39.5	1.4e-12	2	27	52	77
TTT--SS--S-STTTT-------S-- CS SBP 52 lsefDeekrsCrrrLakhnerrrkkq 77 l efD++krsCr+rLa+hnerrrk+q Vang11g10740.1 2 LAEFDDGKRSCRKRLAGHNERRRKPQ 27 89**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.827	1	26	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.51E-9	2	29	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.9E-6	2	25	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
LLAEFDDGKR SCRKRLAGHN ERRRKPQMGI HPGKSGRLLQ PCGDSRFQGS MLTSSFIRPE 60 MLPSGVMCSE KYGVSSFWRP IKAEQGASFR HLSSMPVSNG HPQSRSLFPS YNGKQFPFLH 120 ENCATSTTGS IFCESNSHYP HALGAQNSGL RPLFQDTIGN EDFNVFDTAS TVQGLSGISD 180 SCCALSLLSS QSQNSSSQSS GIPLTHSMVI PSGHGHHYNM SQVSEKIGIS SQTCSSRVSD 240 SFPSELNHAD GSHLSPVLIS DHNDIVNFDM ADGIFHGSEF MNVKDRLPCE DGATIDLLQL 300 SSQLQRVEHE RQSLQVKQEN DSSCTLRIT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g10740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017442953.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Refseq	XP_017442962.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
TrEMBL	A0A0L9TSL5	0.0	A0A0L9TSL5_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R7C2	0.0	A0A0S3R7C2_PHAAN; Uncharacterized protein
STRING	XP_007155210.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1819	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-15	SBP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]