PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g10740.1
Common NameLR48_Vigan01g271500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 330aa    MW: 36023.1 Da    PI: 6.9407
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g10740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP39.51.4e-122275277
                    TTT--SS--S-STTTT-------S-- CS
             SBP 52 lsefDeekrsCrrrLakhnerrrkkq 77
                    l efD++krsCr+rLa+hnerrrk+q
  Vang11g10740.1  2 LAEFDDGKRSCRKRLAGHNERRRKPQ 27
                    89**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.827126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.51E-9229IPR004333Transcription factor, SBP-box
PfamPF031103.9E-6225IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
LLAEFDDGKR SCRKRLAGHN ERRRKPQMGI HPGKSGRLLQ PCGDSRFQGS MLTSSFIRPE  60
MLPSGVMCSE KYGVSSFWRP IKAEQGASFR HLSSMPVSNG HPQSRSLFPS YNGKQFPFLH  120
ENCATSTTGS IFCESNSHYP HALGAQNSGL RPLFQDTIGN EDFNVFDTAS TVQGLSGISD  180
SCCALSLLSS QSQNSSSQSS GIPLTHSMVI PSGHGHHYNM SQVSEKIGIS SQTCSSRVSD  240
SFPSELNHAD GSHLSPVLIS DHNDIVNFDM ADGIFHGSEF MNVKDRLPCE DGATIDLLQL  300
SSQLQRVEHE RQSLQVKQEN DSSCTLRIT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g10740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442953.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
RefseqXP_017442962.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A0L9TSL50.0A0A0L9TSL5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7C20.0A0A0S3R7C2_PHAAN; Uncharacterized protein
STRINGXP_007155210.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18193493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-15SBP family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]