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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g10740.1 | ||||||||
Common Name | LR48_Vigan01g271500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 330aa MW: 36023.1 Da PI: 6.9407 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 39.5 | 1.4e-12 | 2 | 27 | 52 | 77 |
TTT--SS--S-STTTT-------S-- CS SBP 52 lsefDeekrsCrrrLakhnerrrkkq 77 l efD++krsCr+rLa+hnerrrk+q Vang11g10740.1 2 LAEFDDGKRSCRKRLAGHNERRRKPQ 27 89**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.827 | 1 | 26 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.51E-9 | 2 | 29 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-6 | 2 | 25 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
LLAEFDDGKR SCRKRLAGHN ERRRKPQMGI HPGKSGRLLQ PCGDSRFQGS MLTSSFIRPE 60 MLPSGVMCSE KYGVSSFWRP IKAEQGASFR HLSSMPVSNG HPQSRSLFPS YNGKQFPFLH 120 ENCATSTTGS IFCESNSHYP HALGAQNSGL RPLFQDTIGN EDFNVFDTAS TVQGLSGISD 180 SCCALSLLSS QSQNSSSQSS GIPLTHSMVI PSGHGHHYNM SQVSEKIGIS SQTCSSRVSD 240 SFPSELNHAD GSHLSPVLIS DHNDIVNFDM ADGIFHGSEF MNVKDRLPCE DGATIDLLQL 300 SSQLQRVEHE RQSLQVKQEN DSSCTLRIT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g10740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442953.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 | ||||
Refseq | XP_017442962.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X2 | ||||
TrEMBL | A0A0L9TSL5 | 0.0 | A0A0L9TSL5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R7C2 | 0.0 | A0A0S3R7C2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155210.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-15 | SBP family protein |
Publications ? help Back to Top | |||
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