PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g09150.1
Common NameLR48_Vigan01g261200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 356aa    MW: 39795.8 Da    PI: 7.4608
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g09150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-0993117126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C  f+  G C+ Gd+C+FaHg
  Vang11g09150.1  93 FKTRMCAKFRV-GACRNGDNCNFAHG 117
                     69*********.*************9 PP

2zf-CCCH21.54e-07153177125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +k++lC+ +  + +C+yGd+C+F H
  Vang11g09150.1 153 QKMKLCKKYCNGDECPYGDKCSFLH 177
                     5899*******55************ PP

3zf-CCCH421.6e-13236262127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC  f  tG+C++Gd C+FaHg+
  Vang11g09150.1 236 WKTKLCIKFETTGHCPFGDDCHFAHGQ 262
                     8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-1489125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-890123IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-492118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.56892119IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-693117IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012152179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098152180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7152179IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-5153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-8154178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-17229266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-10234266IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375235263IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-11236262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
LIEFDQNFAM SFSDHIPSFM MSPPSFSTDT DAIEVRLQFP MNNDLLEEHS PQDQPPLFKR  60
ARIGDNNHSY PMACPPKMIQ NPNFNKGTSH IFFKTRMCAK FRVGACRNGD NCNFAHGVED  120
MRQPPPNWQE LVGLRNEERL PSGNWDDDQK IIQKMKLCKK YCNGDECPYG DKCSFLHEDP  180
AKFRDDSGRY RESTAINIGT NGSPKAYGDP SNCLENNKVV NTGLNVSRSN VKSTYWKTKL  240
CIKFETTGHC PFGDDCHFAH GQAELQFPGG RNEAETAGAA LVSNKATIPT LPRATPILSN  300
DAPPSQRASV PPANEEEQGK KHLLKWKGPK KINRIYGDWL DDLPLGHNLP GRVGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g09150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412945.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-95C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0L9TRE20.0A0A0L9TRE2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7E40.0A0A0S3R7E4_PHAAN; Uncharacterized protein
STRINGXP_007154979.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-88C3H family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]