PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08590.1
Common NameLR48_Vigan01g268700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 218aa    MW: 24443.9 Da    PI: 8.8594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08590.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.3e-1655104255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ GVr+++ +grW AeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Vang11g08590.1  55 KFLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDKAEEAALAYDCAARLLRG 104
                     789******.7*********42...36**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.56E-3154113No hitNo description
SMARTSM003801.7E-3155118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2755113IPR001471AP2/ERF domain
PROSITE profilePS5103219.7355112IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1955112IPR016177DNA-binding domain
PRINTSPR003675.8E-75667IPR001471AP2/ERF domain
PfamPF008475.1E-1056104IPR001471AP2/ERF domain
PRINTSPR003675.8E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MYAKNTLMED IDSSELSHQS QNQNKNLSLM AIEIDKPYEK RVMKIPKVGK KIEKKFLGVR  60
QRPSGRWIAE IKDSSQKLRL WLGTFDKAEE AALAYDCAAR LLRGRNAKTN FPNPGIMNTH  120
EEDYSILGKN PRSYQLLKHA VMKNHALSAS LYSTFMPSWK NQIMLRDEHD TLVEETIVCS  180
IPEQGSACCG ISFGSSKVYS SVVVAPSFSV SSHDETP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1554112160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g08590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434047.11e-164PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A0L9TRL31e-156A0A0L9TRL3_PHAAN; Uncharacterized protein
STRINGXP_007155177.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-16related to AP2 11
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]