PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08290.1
Common NameLR48_Vigan01g264200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 441aa    MW: 48045.9 Da    PI: 6.6583
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85e-28255305151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ
  Vang11g08290.1 255 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 305
                     68************************************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.31E-12252306IPR009057Homeodomain-like
PROSITE profilePS5129410.949252312IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-23253305IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-23255306IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MASPSELSLD CKPQSYSLLL KSFGDQTDQT YKLEEFLSRL EEERLKIDAF KRELPLCMQL  60
LTNVITHAIL FIEIAMEASR QQLQAFKVNH GAKPVLEEFI PMKHLASESS EKATNMSDKA  120
NWMTSAQLWS QASEGAKQQP TLTSPKEADI GFSISPKLAL DNKPRNGGGA FLPFSKERNS  180
CQGSTLRPLP ELALASSEKE MEDKKRAEAE KGLSCQNKKE NSGSDGAVVD QGKSGSPVAS  240
SLAQTTTTTS QTHRKARRCW SPDLHRRFVN ALQMLGGSQV ATPKQIRELM KVDGLTNDEV  300
KSHLQLVVLG GIWVPPEYAT AAHTGTPTLY GAHPTSHAPP PHYCTATPVP QEFYTAAPQQ  360
QLLPPPPPHH NPLHHLHMYK AAAHGHGSPE SDLPGGGERS ESIEDGKSES SSWKGESGEN  420
EGERKGIGEE SNGSEITLKF *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g08290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422950.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9ZQ851e-110EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A0L9TRG90.0A0A0L9TRG9_PHAAN; Uncharacterized protein
STRINGXP_007154940.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.19e-97G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]