PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g03170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 118aa    MW: 14093.9 Da    PI: 10.5361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g03170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-061436123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL++H r H
  Vang11g03170.1 14 FICEICNKGFQREQNLQHHRRGH 36
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.2E-51336IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0941436IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-61436IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00451436IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.77E-51436No hitNo description
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MALSPKSLLA INKFICEICN KGFQREQNLQ HHRRGHNFLW KLKQRTSKEV RKKVYVCLEP  60
ICVHHDTIYN IWPRIHFHTF HILSCKMICV RTMACLTTLF WVSTRNLFMK FMMINSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14052KLKQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g03170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849510.16e-35PREDICTED: protein indeterminate-domain 7-like isoform X2
RefseqXP_018849512.15e-35PREDICTED: protein indeterminate-domain 7-like isoform X1
RefseqXP_018849513.15e-35PREDICTED: protein indeterminate-domain 7-like isoform X1
RefseqXP_018849514.15e-35PREDICTED: protein indeterminate-domain 7-like isoform X1
RefseqXP_018849515.15e-35PREDICTED: protein indeterminate-domain 7-like isoform X2
SwissprotQ8RWX77e-33IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
SwissprotQ9ZUL38e-33IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0S3R3E92e-81A0A0S3R3E9_PHAAN; Uncharacterized protein
STRINGGLYMA08G20520.22e-33(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.23e-35C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-AvendaƱo E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]