PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02440.1
Common NameLR48_Vigan01g180500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 294aa    MW: 32486.3 Da    PI: 7.6068
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18211245135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Vang11g02440.1 211 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 245
                     *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.6E-845285IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.43E-14204267No hitNo description
SMARTSM004012.1E-16205259IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.939205241IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14209243IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.07E-14210258No hitNo description
PfamPF003201.5E-16211245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440211236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MECLEAVLKS SFRKDMALKL SPQAFPEDLN MQNVTSSDDL FVDDLLDFSL LENEEPDQHK  60
HSHHSTSVSP RNDNHHMYNC NHSFNDNFNT ELTLPAEEVA DLEWVSHFIE DSFSKYSLSF  120
PATVTQSLAE KPPEPGNAGF TFKTLVPAKP RSKRTRTGVR VWPLRSPSSF TDTSSPDSPL  180
VICAATSKDH HPEDKRAKKR AASDGGAARR CSHCGVQKTP QWRTGPLGAK TLCNACGVRY  240
KSGRLLPEYR PACSPTFSSE LHSNHHRKVL EMRQKKEAGP GPDTGSPASV PGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507644.10.0PREDICTED: GATA transcription factor 5-like isoform X1
SwissprotQ9FH571e-67GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0L9TQ000.0A0A0L9TQ00_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4170.0A0A0S3R417_PHAAN; Uncharacterized protein
STRINGGLYMA02G05710.21e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-66GATA transcription factor 5
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]