PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02130.1
Common NameLR48_Vigan01g153600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 327aa    MW: 36340.5 Da    PI: 9.9666
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.18.4e-28160209251
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     pr+rWt+ LH+rFv++v+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  Vang11g02130.1 160 PRMRWTTALHARFVHVVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 209
                     9************************************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.45E-13157209IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-24158209IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-20160209IPR006447Myb domain, plants
PfamPF002491.4E-5161209IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
LSFEKMELFP VQPDLSLKIN PPNTKPTSSN WNKRSTEDEM DLGFWKRALE SKTVKTDLSL  60
SNPRAFSSSS SSCSSNTNTP NPNPILIHHH FQNNTANTNK HNPIQQNHFF HHQDLGFLRP  120
IRGIPLYQNP PFSFPPTSST PFLNPAFLSR FPPKRNIRAP RMRWTTALHA RFVHVVQLLG  180
GHERATPKSV LELMDVKDLT LAHVKSHLQL KLGQSDTYDN GSSGDTSEDL VFDRNSPRRS  240
DLSIRQARTS VNQDIGNGGL WNNSSRQAFL HGKPNLDSIG NVPSAEGMDP KGQSNEISDG  300
NSSSDIAESS GKKLNLDLEF TLGRSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14161209452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14161209452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-14161209351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-14161209351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-14161209351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-14161209351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14161209452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14161209452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14161209452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14161209452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14161209452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14161209452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408097.10.0PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ9C6164e-48KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A0L9TN650.0A0A0L9TN65_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R3E80.0A0A0S3R3E8_PHAAN; Uncharacterized protein
STRINGXP_007156399.11e-140(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-50G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]