PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g01230.1
Common NameLR48_Vigan01g164900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 413aa    MW: 44814.1 Da    PI: 8.5503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g01230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-053254123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C +C+k Fs+   L  H+r H
  Vang11g01230.1 32 FTCDICNKGFSSGKALGGHMRIH 54
                    89*******************99 PP

2zf-C2H221.75.2e-0787108223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ Cgk+Fs++ +L  H+r+H
  Vang11g01230.1  87 TCSVCGKTFSSRKSLFGHMRSH 108
                     6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-103054No hitNo description
Gene3DG3DSA:3.30.160.601.6E-53055IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00383254IPR015880Zinc finger, C2H2-like
PfamPF139128.2E-93254IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7593259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-1081108No hitNo description
SMARTSM003555.7E-486108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.90586113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-687112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PfamPF139123.6E-788109IPR007087Zinc finger, C2H2
SMARTSM0035595257277IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MCVRENRGSV PPEGEGLGGN GGGVNCNEIR SFTCDICNKG FSSGKALGGH MRIHNLSRKR  60
VHGEKQSTGD AAKSKTAKWV MVDGNPTCSV CGKTFSSRKS LFGHMRSHTE KPRKGIRSNA  120
PIVRASSNST SSSTLSDDLT VHLSLVLRGW SVTAKRGRIS SSCSKSDSGL EEGDEIEPRM  180
QEAAYVLMLL ARGSPKCEQV VVADQIQEHP FNKRGREEEL SHPVLGNSDD VKIKKRNRKK  240
VKLTELASTG EEGNRFARCR KCNTSFPSHQ SLNDHLCSLQ NSKNIESRSH GVSATKEEHH  300
AKTTIQGEKT GPGTVLEDRA VEAMRGYECE VLKETFSIGQ AFGDHKRSDW TRMGEGQSAQ  360
ATSSNMGNGQ NCSKVLSFDL NQIPAMDGEE GVQSDLFIPA NIMTSSSYDS SC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g01230.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417741.10.0PREDICTED: zinc finger protein 181-like
TrEMBLA0A0L9TND00.0A0A0L9TND0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4420.0A0A0S3R442_PHAAN; Uncharacterized protein
STRINGXP_007156283.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-14C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]