PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g04980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 470aa    MW: 51493.9 Da    PI: 6.7916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g04980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11286328754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++P+ +      K++ a+iL  AveY+k+L
  Vang10g04980.1 286 MAERRRRKKLNDRLYMLRSVVPNiS------KMDRASILGDAVEYLKEL 328
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.834279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16283348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9285328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-15285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15286342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-13286332No hitNo description
CDDcd048736.47E-4395445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSGWMQETEE QNCASWSNPN ANELSCFYKP ISDIHEEWHV PNSTTQIHSH VTDTAFSTNF  60
AHNMLLHQHQ PLHTFSSSTS LDLSQGHNFF TPKPFFYPLD HAFRAGSDVG FLDPHALNKV  120
HHGGVFSSSN DNNQFALPNL ATLCAMPPQQ DGVGFPGFKN IVDSDHVEGS RKALLLSTSN  180
VLKPLESFPP SGVQPTLFQK RAALRKSMED NCKGKSKGNS DSSKRKTCNN GEGDEGSGLN  240
LDSDESGEME ESGRNGGNSS NANSTVTGGV DQKGKKKTGI PAKNLMAERR RRKKLNDRLY  300
MLRSVVPNIS KMDRASILGD AVEYLKELLQ RIGDLHNELE STTPAGSSLT SSFLHPLTPK  360
LPTSMQEELS LSSLPSPNGQ PVRVDVGLSE GGVKIQMCCE RKPGLLLCTM RALDNLGIDI  420
HQAVITYFNG FSMDILRAQE KFYLLIKSTA KFGTFLIVEV ETKSDDGLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274293KKKTGIPAKNLMAERRRRKK
2287294ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508670.10.0PREDICTED: transcription factor ICE1-like isoform X1
SwissprotQ9LSE28e-86ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S3QXX30.0A0A0S3QXX3_PHAAN; Uncharacterized protein
STRINGGLYMA05G38530.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-72bHLH family protein