PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g04160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 156aa    MW: 17540.6 Da    PI: 4.4533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g04160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.12.4e-2181111114
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGf F+Ptdeelv ++L +k++   ++   +i+++d+  ++Pw+L+ k+ ++ ++ yfFs+++        +nr+t++gyWk+ g +++++s+
  Vang10g04160.1   8 LPPGFCFSPTDEELVLHFLYPKTSLPCHPN--IIPDLDLSLHDPWHLNGKALSSGNQHYFFSRAK--------ENRSTENGYWKEIGLTEAIVSS 92 
                     79********************98776555..8**************977777789999999874........5899****************** PP

             NAM  96 kgelvglkktLvfykgrap 114
                      +e+  ++   v+ k+ ++
  Vang10g04160.1  93 ASEKDQCRSKWVLCKAYEK 111
                     9999999999888765444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-254109IPR003441NAC domain
PROSITE profilePS5100521.4518155IPR003441NAC domain
PfamPF023657.2E-13987IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MACGSVNLPP GFCFSPTDEE LVLHFLYPKT SLPCHPNIIP DLDLSLHDPW HLNGKALSSG  60
NQHYFFSRAK ENRSTENGYW KEIGLTEAIV SSASEKDQCR SKWVLCKAYE KKSCEGRQGV  120
NCDKDENDSG TELSWLDEFY MSLDDDLEEV MSLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-142949110Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g04160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-95AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434502.11e-104PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK62e-40NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0S3QY731e-103A0A0S3QY73_PHAAN; Uncharacterized protein
STRINGXP_007159851.12e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-43xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]