PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g00080.1
Common NameLR48_Vigan05g096300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 347aa    MW: 38850.2 Da    PI: 9.5992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.3e-066688123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C++ F r  nL+ H r+H
  Vang10g00080.1 66 FVCEICNQGFQRDQNLQMHRRRH 88
                    89********************9 PP

2zf-C2H214.97.6e-05143165123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k +  +s++k H++t+
  Vang10g00080.1 143 WVCERCSKGYAVQSDYKAHLKTC 165
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00956688IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.66E-56688No hitNo description
PROSITE profilePS5015710.7836688IPR007087Zinc finger, C2H2
PROSITE patternPS01359068148IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355190107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4134164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100143170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASLVRIDTL LKTSSPSSLP TSQPFSFAQN ATTPTNKRKR RPAGTPDPDA EVVSLSPKTL  60
LESDRFVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRETP LVKKRVFVCP EPTCLHHDPC  120
HALGDLVGIK KHFRRKHSSH KQWVCERCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR  180
VESFIEHQDA CNVGRLRSET QAVQAAACLS RTASSPSSEN NFSTGTGNKR EGNPSAQLQL  240
SIGSLEKGCM REKSLGGRFE DEAREQLRIA VAEKAYAEEA RKQAKRQMEQ AELEFTNAKR  300
IRQQALAELD KACALKDHAI KQIHSTMLQI TCLACKHHFQ SPTCSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17141193557Zinc finger protein JACKDAW
5b3h_F1e-17141193557Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g00080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424320.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X71e-135IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A0L9ULC20.0A0A0L9ULC2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QWD80.0A0A0S3QWD8_PHAAN; Uncharacterized protein
STRINGXP_007160566.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-127indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]