PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g05630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 281aa    MW: 30973.3 Da    PI: 8.3951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g05630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088216238223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg  Fs+  +L+ H    H
  Vang07g05630.1 216 SCPQCGVKFSSAISLVDHVLQvH 238
                     6*****************87666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.101.4E-981137IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.12E-883135No hitNo description
PfamPF014288.6E-891131IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.871215243IPR007087Zinc finger, C2H2
SMARTSM003550.052215238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
SMARTSM003556.4251274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFIFGHTEVT RVTEWKRPNK NQLIYCLEHR GYIEHKCTKP NKEDVKVVIC PLCAKGVRLI  60
PDQDPNIAWD HHVNIDCDPS NYQKVTKKRK CPAPGCREVL VFSNTIKCRD CLEDHCLKHR  120
FGPDHKCSGP KKLEKSFSFM SLFNTIKKEE PKPNLTSTAS SKWTSSFLSV ASNIRASAEA  180
SMSKLSNEIN QVWLAARDSA GPNSGSGNKN DLQEESCPQC GVKFSSAISL VDHVLQVHES  240
NGKPVGVKKI EACPKCSGGF VDPVSLVEHV ERDHGGGSGA *
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g05630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418004.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-85SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0L9U7I50.0A0A0L9U7I5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RXE60.0A0A0S3RXE6_PHAAN; Uncharacterized protein
STRINGXP_007162230.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.12e-85C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]