PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g04930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 223aa    MW: 24964.6 Da    PI: 7.4287
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g04930.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049124146123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C k+F+++  L +H + +
  Vang07g04930.1 124 HQCQSCQKTFRSSRALGSHRSIC 146
                     79*****************9876 PP

2zf-C2H212.30.00053156178123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+k+F +   L  H r+H
  Vang07g04930.1 156 FECPFCSKVFGSGQALGGHKRSH 178
                     89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.370.103.7E-4112165No hitNo description
SuperFamilySSF576676.82E-8122178No hitNo description
PfamPF139120.002124143IPR007087Zinc finger, C2H2
SMARTSM0035570124144IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-12156179IPR007087Zinc finger, C2H2
SMARTSM003550.028156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097156178IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKKKSYSIGA RLADPEFDSG AVVQDRESET ESKNPTRRRS KRPRRPANSQ PKARPKLSFM  60
ESPEPVSSVS DTSPEEDVAM CLMMLSRDRW SKNTHAAVDN NNPVEDEEER SLEEIKFRRV  120
RRKHQCQSCQ KTFRSSRALG SHRSICEGSG NDSKIFECPF CSKVFGSGQA LGGHKRSHMV  180
PSSSSTANDS TRFKESFIDL NFPAPPEEED DLSVVSDAQF DD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g04930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520182.11e-139zinc finger protein ZAT9-like
TrEMBLA0A0S3T5G41e-152A0A0S3T5G4_PHAAN; Uncharacterized protein
STRINGXP_007157307.11e-116(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-33C2H2-like zinc finger protein