PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g04300.1
Common NameLR48_Vigan06g005200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 286aa    MW: 32581.9 Da    PI: 6.9311
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g04300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.5e-082342672154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  Vang07g04300.1 234 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 267
                     469*****************************87 PP

2ELK25.52.9e-09188209122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  Vang07g04300.1 188 ELKIELKQGFKSRIEDVREEIL 209
                     9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.6E-192266IPR005540KNOX1
PfamPF037902.5E-172465IPR005540KNOX1
SMARTSM012565.9E-2377132IPR005541KNOX2
PfamPF037911.1E-1681131IPR005541KNOX2
PROSITE profilePS512139.132188208IPR005539ELK domain
PROSITE profilePS5007111.71208271IPR001356Homeobox domain
SuperFamilySSF466892.95E-16210275IPR009057Homeodomain-like
SMARTSM003895.3E-11210275IPR001356Homeobox domain
CDDcd000865.58E-12211272No hitNo description
Gene3DG3DSA:1.10.10.603.8E-25215273IPR009057Homeodomain-like
PfamPF059201.0E-17228267IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQEPRLGMMG GLSGEVSGDH HRQLKAEIAT HPLYEQLLAA HVACLRVATP IDQLPLIDAQ  60
LSHSHHLLRS YVSHHTHSLS PNDRQELDNF LAQYLIVLCT FKEQLQQHVR VHAVEAVMAC  120
RDIENTLQAL TGVSLGEGTG ATMSDDEDEL QMDFSLDQSS AEGHDMMGFG PLLPTESERS  180
LMERVRQELK IELKQGFKSR IEDVREEILR KRRAGKLPGD TTSVLKNWWQ QHAKWPYPTE  240
DDKAKLVEET GLQLKQINNW FINQRKRNWH SNSQSVTSLK SKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12211267864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264284RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g04300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0950030.0BT095003.1 Soybean clone JCVI-FLGm-6F23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427504.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0L9UPV40.0A0A0L9UPV4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T5I90.0A0A0S3T5I9_PHAAN; Uncharacterized protein
STRINGXP_007158449.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-172KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  5. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]