PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 248aa    MW: 27046 Da    PI: 7.2519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0581103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C + F++   L  H+++H
  Vang07g03310.1  81 YTCTYCRREFRSAQALGGHMNVH 103
                     9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-678108No hitNo description
PROSITE profilePS5015711.34481108IPR007087Zinc finger, C2H2
PfamPF139127.4E-781104IPR007087Zinc finger, C2H2
SMARTSM003550.005781103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAAEIGLVSM TQIQKLSQSQ HPKKQQPQPN PNITTTTPSS WMWNPSQQLH HQEDDDDSWE  60
VRAFAEDTRN IMGTTWPPRS YTCTYCRREF RSAQALGGHM NVHRRDRARL NQPPPSSTAI  120
SSLPTSSPYI NIPPQDLVAN AGLCLLYHLP PSPSAPPFSN SPSTNTLSSS PSPSTLLSIS  180
SYPSTNFLMQ TSFNFPGAPS TGINTATVSS FYSSKVEQSA TSSSFAAGHL EELDLELRLG  240
HKPTQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-1376103229superman protein
2l1o_A5e-1376103229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g03310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427025.10.0PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A0S3T5711e-180A0A0S3T571_PHAAN; Uncharacterized protein
STRINGXP_007156668.19e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-35C2H2 family protein