PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0795s00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRF
Protein Properties Length: 280aa    MW: 30468.6 Da    PI: 6.6017
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0795s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC44.13.6e-14107132126
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkk 26 
                       d+epgrCrRtDGKkWRCsr+v++g++
  Vang0795s00010.1 107 DPEPGRCRRTDGKKWRCSRDVVAGQN 132
                       79********************9985 PP

2QLQ29.32.8e-117294123
               QLQ  1 saFTaaQlqlLksQilAyKyLaa 23
                      s+F+ +Q+q+L+ Q+l+++y++a
  Vang0795s00010.1 72 SYFSLSQWQELELQALIFRYMLA 94
                      78*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF088804.9E-67394IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166714.246107154IPR014977WRC domain
PfamPF088799.3E-11108131IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDLHLKQWRN QHESEEQHST KMPKLLPESH QQPQTQSSAS ALPLFVPEPN SKVSTLSDST  60
LPATNRFPRM GSYFSLSQWQ ELELQALIFR YMLAVLQSGY WGRGAMDPEP GRCRRTDGKK  120
WRCSRDVVAG QNSSGTKNED KSLFENEDNV GGDGRAGGHM LRHFFDDWPR SMQHSDNVEN  180
NAAPARINSS TCLSISMPGN ASSDVSLKLS TGPTNENVNL QSDQLQLNWA GGWAGGSQVA  240
SVGGPLAEAL RSSTSTSSPT SVLHHLPPAS GSETSFVTT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495385.11e-159PREDICTED: growth-regulating factor 3
SwissprotQ8L8A76e-34GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A151TVL91e-141A0A151TVL9_CAJCA; Uncharacterized protein
STRINGGLYMA19G37740.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.17e-35growth-regulating factor 4