PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25790.1
Common NameLR48_Vigan02g004000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 262aa    MW: 30776 Da    PI: 6.687
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-35371292103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+i++d +++e++sws+ +nsfvv+d++ f+ ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+ 
  Vang06g25790.1  37 FLTKTYDIVDDVSTDEIVSWSRANNSFVVWDPQAFSISLLPKYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQRHLLKI 122
                     9*********************99*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  Vang06g25790.1 123 IRRRKSS 129
                     ****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3830120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.57E-3432126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5933126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNRIDDGPVI VKEEFPGEGL VAPQPLEGLH ESGPPPFLTK TYDIVDDVST DEIVSWSRAN  60
NSFVVWDPQA FSISLLPKYF KHNNFSSFVR QLNTYGFRKV DPDKWEFANE GFLRGQRHLL  120
KIIRRRKSSQ QPQVPQQSMD HCVEVGRFGL DGEIDGLRRD KQVLMMELVK LRQQQQNTKN  180
HLQSMESRLK KTEQKQQQMM KFLARAMQNP NFLQQLVQER EWRKELEEAI SNKRRRPICD  240
AEECSVLVKL EQEEYNEISE LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-263212912123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512857.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0L9TTM00.0A0A0L9TTM0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SV590.0A0A0S3SV59_PHAAN; Uncharacterized protein
STRINGGLYMA10G00560.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]