PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g23810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 728aa    MW: 79469 Da    PI: 6.4652
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g23810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07301321526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  Vang06g23810.1 301 PCPDFRK-GACRRGDMCEYAHG 321
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.207.4E-1733179IPR020683Ankyrin repeat-containing domain
SMARTSM0024838003665IPR002110Ankyrin repeat
CDDcd002042.61E-1441161No hitNo description
SuperFamilySSF484032.95E-1641165IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-783152IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.77783190IPR020683Ankyrin repeat-containing domain
SMARTSM002480.006883113IPR002110Ankyrin repeat
PROSITE profilePS5008810.74118153IPR002110Ankyrin repeat
SMARTSM002480.0016118150IPR002110Ankyrin repeat
SMARTSM003564.0E-6296322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4300323IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5301321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582301323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4329359IPR000571Zinc finger, CCCH-type
SMARTSM0035643331354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
LERLKSVLLL TLFANFVTAS QPRSHIMNHL TIETEDSFAS LLELAANNDV EGFKRMIERD  60
PSCVDEVGLW YSRQKGSRRM VNELRTPLMV AATYGSIDIL DLILSLSGYD INKPCGLDKS  120
TALHCAASGG AENAVDVVIL LLAAGADPNS VDGNGHRPVD VIVVPPKHET VRNSLEALLQ  180
TDDSIAVCNL RVITAPSNAY SPPLSTSPEN GSPSAPDFHM KSKLNDGFVS SASEKKEYPV  240
DPSLPDIKNS IYSTDEFRMY SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV  300
PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCSRRVCFF AHTAEELRPL  360
YVSTGSAVPS PRSSTSSAME FAAAMNMLPG SPSSMSVMSP SPFTPPMSPS ANGMSHSSVG  420
WPQPNVPALH LPGSNLHSSR LRSSFNARDI PMDEFDMLPE YDAQQQQQLL NEFSCLSKQP  480
NAMNRSGRIK TLTPSNLDDL FSSESSSPRF ADPALASAVF SPTHKSAILN QFQQQQSLLS  540
PVNTNFSSKN VENPLLQAAS FGVQTSGRMS PRNVEPISPM SSRISVLAQR EKQQQFRSLS  600
SRELGSNSAT VAAAAAGSPV NSWSKWGPSN GTLDWAVNAD ELRKHRRSSS FEHGNNSEEP  660
DFSWVQSLVK ESPTEIKENS TATVSSGAAA GSSSEVSNMS TQMDSVDHAV LGAWLEQMQL  720
DLVAQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g23810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415146.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3V7910.0A0A1S3V791_VIGRR; zinc finger CCCH domain-containing protein 30
STRINGXP_007145619.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]