PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g22360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 298aa    MW: 32908.7 Da    PI: 8.9058
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g22360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033184206223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg  Fs+   L+ H ++ H
  Vang06g22360.1 184 QCPQCGAKFSSVTALVDHVQKvH 206
                     7******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.103.8E-1055118IPR000058Zinc finger, AN1-type
SuperFamilySSF1183105.69E-957110No hitNo description
PROSITE profilePS510398.02262109IPR000058Zinc finger, AN1-type
PfamPF014285.1E-865104IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.411183211IPR007087Zinc finger, C2H2
SMARTSM003550.0034183206IPR015880Zinc finger, C2H2-like
PfamPF138941.9E-4184206No hitNo description
PROSITE patternPS000280185206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
LEHRGYIKHQ CPKADKQDVT VVVCPLCAKG VRLVPDQDAN ITWENHVNTD CDPSNYEKVT  60
KKKKCPVPGC REILGFSNTI KCRDCMVDHC LKHRFGPDHK CPGPRKMETS FSFRNLLNVS  120
KKQESKPQPS SSASSRWSTG FLNAVSNIRS SAEAGVSKLS EANQGWWKAS GGVGASQSSG  180
QVEQCPQCGA KFSSVTALVD HVQKVHERSG NRSGPKVAID ACPKCSRGFQ DPVALVEHVV  240
LLMELKEEGM KYRREITQKI LEFLSPEISI YMNLCFIFVK GTWTENSKIN PVALATK*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g22360.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412667.11e-177PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B92e-92SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ8VZ428e-93SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0L9TVJ81e-175A0A0L9TVJ8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SUC21e-175A0A0S3SUC2_PHAAN; Uncharacterized protein
STRINGGLYMA02G31550.21e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.19e-87C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]