PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g22330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 57aa    MW: 6732.81 Da    PI: 10.4968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g22330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.53.2e-082244123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r+ nL++H r H
  Vang06g22330.1 22 FICEICNKGFQRWQNLQHHRRGH 44
                    89*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.53E-62145No hitNo description
PfamPF128747.2E-52244No hitNo description
PROSITE profilePS5015710.5752244IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-62244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00292244IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
LGDPDAEVMA LSPKSLLAIN KFICEICNKG FQRWQNLQHH RRGHNFLWKL KQRTSKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g22330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-87AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017487.11e-26PREDICTED: protein indeterminate-domain 2
RefseqXP_016687546.11e-26PREDICTED: protein indeterminate-domain 2-like
RefseqXP_021896421.11e-26protein indeterminate-domain 2-like isoform X1
RefseqXP_022009618.11e-26protein indeterminate-domain 2-like
RefseqXP_022751372.12e-26protein indeterminate-domain 2-like
RefseqXP_022751373.12e-26protein indeterminate-domain 2-like
SwissprotQ9LVQ74e-26IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A0S3SU535e-28A0A0S3SU53_PHAAN; Uncharacterized protein
STRINGEOY147125e-26(Theobroma cacao)
STRINGevm.model.supercontig_216.264e-26(Carica papaya)
STRINGevm.model.supercontig_64.665e-26(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-28C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]