PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g17850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 472aa    MW: 52126.4 Da    PI: 8.7497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g17850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Vang06g17850.1  6 FVCEICNKGFQRDQNLQLHRRGH 28
                    89*******************88 PP

2zf-C2H213.10.0002982104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  Vang06g17850.1  82 WKCDKCSKRYAVQSDWKAHHKTC 104
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121717.4E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355754777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-777102No hitNo description
SMARTSM0035512082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRASN EVKKRVYVCP EPSCVHHNPA  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH HKTCGTREYK CDCGTIFARR  120
DSFITHRAFC DALTEENNRV NPSLTSGTGM TPSLQNELQE LMATMPLSTS SNNAVPEFNN  180
SYESSKSPLK SLSQEHLVPM PFKSMSMRGC MSSTTSGTLF GGPKNMSLPL SSTLQLSSNN  240
SHTFNYFQDS KNSAASAHMS ATALLQKAAQ MGAAASNNTI NSSPTMMQKS FVSGIIGPHP  300
NHSPSSYDPF HHPDPHPDDQ SHMSGIRDAG AFTNQFVHKG QQEMSAMLDS NTSDMGIFGA  360
MFMGSDHNQG VMKNVEQEVG ASSSSFIRRR DVSEGNPTGA SRFGGADMTM IHDFLGVGGA  420
TSRAGSLHEP QKQQQSLELE ALTHQRLQMI NHFHHHLPHG DSAMEKSVWD I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3478141366Zinc finger protein JACKDAW
5b3h_F1e-3478141366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g17850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414167.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ62e-95IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0S3SS900.0A0A0S3SS90_PHAAN; Uncharacterized protein
STRINGXP_007163889.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-93indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]