PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g17510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 315aa    MW: 34924.7 Da    PI: 10.5527
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g17510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31248306360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  Vang06g17510.1 248 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 306
                     99***********************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-17199244IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33234306IPR003657WRKY domain
PROSITE profilePS5081129.998241307IPR003657WRKY domain
SuperFamilySSF1182904.32E-27244306IPR003657WRKY domain
SMARTSM007744.7E-38246306IPR003657WRKY domain
PfamPF031064.6E-27248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVCGKHAGHK SQGKQSPLFH TFQSHNRGKK NLGFSTTKFV KANMEEVEQA NRAAVESCHR  60
VLSLLSQPRD QVQHRNLVVE TGDAVVKFKK VVSLLKSGLG HARVRKVKNP QVPFTHQSIF  120
LDNPNCKTNN HHSKNLQLFQ PSFPDNSIVE LGSTIKHSLS LAQPSLELSS NGSVANLDGS  180
AFHLIGAPHS SDQNSQQHKR KCSARGDEGS LKCGSSSRCH CSKKRKHRLK RSIKVPAISN  240
KLADIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSMRGCPA RKHVERCLEE PTMLIVTYEG  300
EHNHPKLPTQ STNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20239308775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g17510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629302.11e-129LOW QUALITY PROTEIN: probable WRKY transcription factor 21
SwissprotQ93WU68e-89WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A151S3451e-169A0A151S345_CAJCA; Putative WRKY transcription factor 39
STRINGGLYMA03G31630.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-67WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]