PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g17240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 382aa    MW: 42126.6 Da    PI: 9.1671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g17240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-057395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Vang06g17240.1 73 FVCEICNKGFQRDQNLQLHRRGH 95
                    89*******************88 PP

2zf-C2H212.60.00041149171123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  Vang06g17240.1 149 WKCEKCSKIYAVQSDWKAHSKTC 171
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.88E-77295No hitNo description
Gene3DG3DSA:3.30.160.601.2E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9497395IPR007087Zinc finger, C2H2
PfamPF121715.7E-57395IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355170114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.88E-7144169No hitNo description
SMARTSM00355170149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MFPSVMSNSN SLSEEATVSC GTRIGGLNHV VTTIISPQQP QKIKKKRNLP GNPDPDAEVI  60
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK KKAYVCPEPS  120
CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRKDSF ITHRAFCDAL AEESARLTTT NNNNISSPSL LLHHPPKTMI TSPYSDLHVR  240
PSNAATSAHL SATALLQKAA TFGAAAITGP THVTPLSMAE LGTGSTQLDS VPPERYMNMR  300
GLTNSDGLTR DFLGLTNGDA VNVSIDVKDM LTFTGGSVEY NHYHHQAYDH HHNHSNSLFK  360
PQHGFGFLGT TTGPESWGNC E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-38145214372Zinc finger protein JACKDAW
5b3h_F1e-38145214372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g17240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514330.10.0protein indeterminate-domain 12
SwissprotO227591e-130IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A1S3V7R50.0A0A1S3V7R5_VIGRR; protein indeterminate-domain 12
STRINGXP_007144666.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-114indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]