PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g16500.1
Common NameLR48_Vigan1086s000600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 142aa    MW: 16069.7 Da    PI: 6.5028
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g16500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013729123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  Vang06g16500.1  7 YECVFCKRGFTTAQALGGHMNIH 29
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-6534No hitNo description
Gene3DG3DSA:3.30.160.603.3E-4533IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99734IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGTGRSYECV FCKRGFTTAQ ALGGHMNIHR KDRANRTKPS TSTKLDDTNT YADLGLYSAS  60
NPSYLSRGTY YSTLPDSEVQ YSEVFCVENQ RDPHLLFGQD WRQKGLTFYT NPLCVHGNKD  120
KIENNTEEDD LDLELRLGHH P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g16500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-129AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411281.13e-98PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0L9TIH17e-97A0A0L9TIH1_PHAAN; Uncharacterized protein
STRINGXP_007144929.11e-75(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-16C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]