PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g15030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 122aa    MW: 13845.6 Da    PI: 8.4877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g15030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-085275326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     +lC +f+ tG+C+yG +Ck+ H+
  Vang06g15030.1 52 PPLCFHFLNTGFCRYGHSCKYLHP 75
                    689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-14449No hitNo description
PfamPF062207.5E-10539IPR013085Zinc finger, U1-C type
PROSITE profilePS5010315.9394977IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-44976IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-74977IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-65275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-65474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MPARKYYCDY CDKQFQDTPA DRKRHVNGIQ HLQAKARWYD SFNQHHQQIP NPPLCFHFLN  60
TGFCRYGHSC KYLHPTPNNT TQHAPIPLPG NVVGVSLGNL PPSLQPPPEA GYPHLPFVDW  120
G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g15030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150415e-98AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512981.13e-85zinc finger CCCH domain-containing protein 3
SwissprotQ0JP112e-34C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1S3V3Q37e-84A0A1S3V3Q3_VIGRR; zinc finger CCCH domain-containing protein 3
STRINGXP_007145029.12e-80(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-33C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]