PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g14300.3
Common NameLR48_Vigan02g142000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 139aa    MW: 15318.6 Da    PI: 10.0559
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g14300.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000461638123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  Vang06g14300.3 16 FQCKTCNRKFSSFQALGGHRASH 38
                    89**********99999998887 PP

2zf-C2H214.30.000125880123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cg+ Fs    L  H+r+H
  Vang06g14300.3 58 HECSICGQGFSLGQALGGHMRKH 80
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.9E-41334IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.2631643IPR007087Zinc finger, C2H2
SuperFamilySSF576677.68E-91680No hitNo description
SMARTSM003550.0991638IPR015880Zinc finger, C2H2-like
PfamPF139129.7E-111640IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-55682IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-95782IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5755885IPR007087Zinc finger, C2H2
SMARTSM003550.115880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MVAVLKRQRE NESEEFQCKT CNRKFSSFQA LGGHRASHKK PKLEGEEGKD LSRKPKTHEC  60
SICGQGFSLG QALGGHMRKH RGGMNEGFSS VIAEAPLLKR SNSSKRVMCL ELDLNLTPLE  120
NDLKLLFGNK APTVHLSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13853KKPKLEGEEGKDLSRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g14300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414050.14e-97PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-41ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0L9TXJ71e-95A0A0L9TXJ7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SRD81e-95A0A0S3SRD8_PHAAN; Uncharacterized protein
STRINGXP_007144473.19e-79(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-44C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]