PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g14300.1
Common NameLR48_Vigan02g142000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 106aa    MW: 11873.8 Da    PI: 10.2823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g14300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031638123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  Vang06g14300.1 16 FQCKTCNRKFSSFQALGGHRASH 38
                    89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-41334IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-51442No hitNo description
PROSITE profilePS5015710.2631643IPR007087Zinc finger, C2H2
PfamPF139126.1E-111640IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MVAVLKRQRE NESEEFQCKT CNRKFSSFQA LGGHRASHKK PKLEGEEGKD LSRKPKTLIA  60
EAPLLKRSNS SKRVMCLELD LNLTPLENDL KLLFGNKAPT VHLSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13853KKPKLEGEEGKDLSRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g14300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150417e-91AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414050.14e-63PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A0L9TXJ79e-62A0A0L9TXJ7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SRD89e-62A0A0S3SRD8_PHAAN; Uncharacterized protein
STRINGXP_007144473.17e-51(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-24C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]