PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g14290.3
Common NameLR48_Vigan02g141900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 151aa    MW: 17004 Da    PI: 10.7341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g14290.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00142547123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C  C++ Fs+   L  H  +H
  Vang06g14290.3 25 FECRTCNRKFSSFQALGGHRASH 47
                    89**********99999998887 PP

2zf-C2H216.52.4e-057092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cgk Fs    L  H+++H
  Vang06g14290.3 70 HECSICGKKFSLGQALGGHMKRH 92
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-92592No hitNo description
PROSITE profilePS5015710.4922552IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-42543IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.332547IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-102548IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-56292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.0977092IPR007087Zinc finger, C2H2
SMARTSM003550.037092IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-107093IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
LANCLVLLSR PIEIKPHKLF RPQEFECRTC NRKFSSFQAL GGHRASHKTP KQDVKEEEKI  60
LRLGNKTKKH ECSICGKKFS LGQALGGHMK RHRIALNEGF SSINQALVKV PILKRSNTTR  120
VMCLDLNLTP LQNDLKLLFG DKAPRVDSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g14290.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414343.11e-107PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD44e-40ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0L9TYK51e-105A0A0L9TYK5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SRD21e-105A0A0S3SRD2_PHAAN; Uncharacterized protein
STRINGXP_007144472.11e-88(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-42C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]