PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g14290.2
Common NameLR48_Vigan02g141900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 161aa    MW: 18249.3 Da    PI: 10.6883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g14290.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00153557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C  C++ Fs+   L  H  +H
  Vang06g14290.2 35 FECRTCNRKFSSFQALGGHRASH 57
                    89**********99999998887 PP

2zf-C2H216.42.6e-0580102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cgk Fs    L  H+++H
  Vang06g14290.2  80 HECSICGKKFSLGQALGGHMKRH 102
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.600.0013553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.333557IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.1E-935102No hitNo description
PfamPF139126.2E-103558IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4923562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-572102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0380102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.09780102IPR007087Zinc finger, C2H2
PfamPF139123.1E-1080103IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKRQREDSVD LANCLVLLSR PIEIKPHKLF RPQEFECRTC NRKFSSFQAL GGHRASHKTP  60
KQDVKEEEKI LRLGNKTKKH ECSICGKKFS LGQALGGHMK RHRIALNEGF SSINQALVKV  120
PILKRSNTTR VMCLDLNLTP LQNDLKLLFG DKAPRVDSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g14290.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414343.11e-115PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD42e-43ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0L9TYK51e-113A0A0L9TYK5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SRD21e-113A0A0S3SRD2_PHAAN; Uncharacterized protein
STRINGXP_007144472.11e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-45C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]