PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g10140.3
Common NameLR48_Vigan10g091700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 262aa    MW: 29287 Da    PI: 6.5837
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g10140.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.62.5e-55821842101
           NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                     l++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkr+tl+k+diaaa+trtdifdflv
  Vang06g10140.3  82 LQVFWTNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRKTLQKNDIAAAITRTDIFDFLV 176
                     89*****99999*********************************************************************************** PP

           NF-YC  94 divprdel 101
                     divpr++ 
  Vang06g10140.3 177 DIVPREDY 184
                     *****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.37E-3367175IPR009072Histone-fold
PfamPF008085.8E-22103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDHQGHGHGQ NPSLGVVGSG TQLTYGSNPY QGSHITGSPG MVVASPGTIQ STVQAAATQL  60
GQHQLAYQHM HQQQQQQMQQ RLQVFWTNQY QEIEKVTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRKTLQKN DIAAAITRTD IFDFLVDIVP  180
REDYKDEVLA SMPRGTVPVT APPEALPYCY MPPQHAQVGA AGVMMSNKTV MDPYAQQSHQ  240
YNMAQQMWPQ PPEQQQSSSD Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B2e-4096181994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C2e-4096181994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
1n1j_B2e-40961811297NF-YC
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511829.10.0PREDICTED: nuclear transcription factor Y subunit C-3
SwissprotQ8L4B21e-82NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A0L9VJ030.0A0A0L9VJ03_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SQI30.0A0A0S3SQI3_PHAAN; Uncharacterized protein
STRINGGLYMA20G37620.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-80nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]