PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09880.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 155aa    MW: 17343.1 Da    PI: 9.3808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09880.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-202676255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+ +++g
  Vang06g09880.4 26 RYRGVRRRP-WGKFAAEIRDSTR---QgQRVWLGTFNTAEEAARAYDRAAYAMRG 76
                    6********.**********322...24*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-242685IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-312686IPR001471AP2/ERF domain
PfamPF008472.3E-152676IPR001471AP2/ERF domain
PROSITE profilePS5103223.7362684IPR001471AP2/ERF domain
CDDcd000187.80E-172685No hitNo description
SMARTSM003802.3E-342690IPR001471AP2/ERF domain
PRINTSPR003671.5E-112738IPR001471AP2/ERF domain
PRINTSPR003671.5E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQKNKNQTMD EEGSRGKTKD EPGDVRYRGV RRRPWGKFAA EIRDSTRQGQ RVWLGTFNTA  60
EEAARAYDRA AYAMRGPFAI LNFPEEYPMT AGGATNAATH SSVASSSSSS SSRHANVEAR  120
GRSDQGRQVF EFEYLDDKLL EELLDFEDKK KRGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-362613914114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09880.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435976.11e-104PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0S3SPD11e-110A0A0S3SPD1_PHAAN; Uncharacterized protein
STRINGGLYMA20G34550.14e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.17e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]