PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08980.4
Common NameLR48_Vigan09g102300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 238aa    MW: 25970.5 Da    PI: 6.5084
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08980.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.52.2e-111233355
         G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                    +++m+vkgLtl+h+kSHLQkYRl
  Vang06g08980.4  1 MRTMNVKGLTLYHLKSHLQKYRL 23
                    689*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-10124IPR009057Homeodomain-like
PfamPF143793.0E-1364109IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDEGCKDGSY LQESPGTDNS SPKLPTSDAN  60
EGHEVKEALR AQMEVQSKLH LLVEAEKHLQ IRQDAERRYM GMLERACKML ADQFIGDIIM  120
DTDGQKFQGL ESKTPRSSLV DHVGFFPPVC SEVGGMHVSE VPPILQPQGA DCSTESCLTS  180
LESLGGLTLE GSPGGSKKRM LSLDSMVAPL IWSEANTRTQ GIHLAQVNPP GITRYGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g08980.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511136.11e-175protein PHR1-LIKE 2 isoform X4
RefseqXP_017437289.11e-175PREDICTED: protein PHR1-LIKE 2-like isoform X2
TrEMBLA0A0L9VCI21e-175A0A0L9VCI2_PHAAN; Uncharacterized protein
STRINGXP_007144235.11e-165(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.13e-35G2-like family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]