PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 171aa    MW: 18664 Da    PI: 9.2077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000325274123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C+++F++   L  H  +H
  Vang06g08910.1 52 YECKTCNRTFPSFQALGGHRASH 74
                    99**********99999998887 PP

2zf-C2H214.40.00011127149123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Vang06g08910.1 127 HECSICGAEFTSGQALGGHMRRH 149
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-135176IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-95174No hitNo description
SMARTSM003550.0525274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3885279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-9122149No hitNo description
Gene3DG3DSA:3.30.160.605.3E-4125149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-13126151IPR007087Zinc finger, C2H2
SMARTSM003550.01127149IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868127154IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MANCLILLAQ GQSRESPKHV EEDVGMNYAK YSSRKFLEAA TLGSSRAGYY VYECKTCNRT  60
FPSFQALGGH RASHKKLKAI VPIPQEKKHQ HLLSSDEDDF QLKPNNKSPF SLQLGTKASL  120
YNKSKVHECS ICGAEFTSGQ ALGGHMRRHR APVAVENGDS NNGGSSDVVH *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g08910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409390.11e-112PREDICTED: zinc finger protein ZAT5
SwissprotQ681X41e-32ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0L9TDV41e-110A0A0L9TDV4_PHAAN; Uncharacterized protein
STRINGXP_007144239.16e-97(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.18e-44C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]