PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08390.1
Common NameLR48_Vigan02g209800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 682aa    MW: 75024.6 Da    PI: 8.1354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-057799223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    kC++C++ F ++ n++rHir+ H
  Vang06g08390.1 77 KCNKCSREFCSPINYRRHIRVqH 99
                    7*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.32876104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MPVAKLPASG TTGFTKTDDG NDSLDTIFRQ AIGKEPLLSF PRAGDSPVQW IQLLHALDQQ  60
ELPGWPLLSP VKVQLQKCNK CSREFCSPIN YRRHIRVQHR LKKLDKDSKK NRELLGAYWD  120
KLSIEEAKEV VSFKNVMLEE VPGSSILEAL TTLRKQGFSS LPQYYLRAGS ALLNIVQSRP  180
SSFPISSQEL FSILDDSSEK TFLVGSAVSM QRYVFDGEAG KIGLEQKNLV ACTSFLLEQK  240
LVKSWLADKD AEALRCQKLL VEEEEAAQKR KAEILERKRQ KKLRQKEHKA KEQIENDTET  300
KGNISSAGED VSPGEASLGT CDFDAHNPDI FADHSPPPPH VTSHCLDTND VIEKDTLAGY  360
DDCDTDQYIE RQTLPAHNRP GTVPGRWQGL PKSQWARANG LNAGQNSQLT KLGVIQKHRT  420
SHDLRVAPII NGSKVWSRKP KAESNDLVVK NKLLKEPDKV KNHEVLIGSV SVSLGNSCHS  480
RGNFMAPQRD CSAAGNLSKL NTAQEKPGSN GRLTAKFWRP VSQHGTKDPF PLQNGGTEAD  540
AINGKIDENS SGQSSLRLCS VEGNDDIDFG DNFSHNVAKV DTESLRLSSH AAESFLAQRW  600
KEAISSDHVK LVFTPDSEPR GGQSVQDCEL AADASDADRC GVLASTENLL PATSGVARSK  660
PKTKPEKGMK IKYIPKQKTA A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g08390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415502.10.0PREDICTED: uncharacterized protein LOC108326484
TrEMBLA0A0L9TZF50.0A0A0L9TZF5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SN590.0A0A0S3SN59_PHAAN; Uncharacterized protein
STRINGXP_007143440.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-145C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]