PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g06260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 372aa    MW: 41981.7 Da    PI: 8.779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g06260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05215234120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  Vang06g06260.1 215 FSCTVCNKTFTRFNNMQMHM 234
                     89*****************9 PP

2zf-C2H212.60.00043300322123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k F  + + ++H +++
  Vang06g06260.1 300 FECRKCKKAFAVRGDWRTHEKNC 322
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF507295.9E-81657IPR011993PH domain-like
PfamPF079339.5E-91657IPR012466NECAP-1, N-terminal
Gene3DG3DSA:2.30.29.303.6E-101656IPR011993PH domain-like
SuperFamilySSF576671.12E-5206238No hitNo description
SMARTSM003550.15215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783215242IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-6215234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SMARTSM00355120263295IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.41E-5285320No hitNo description
Gene3DG3DSA:3.30.160.606.6E-5287320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035561300320IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006897Biological Processendocytosis
GO:0016020Cellular Componentmembrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
LDEVVARLAL KIRIWVTSSS RASCTLIEDS RGKHAFIGLE FNERNEAFDF NVALSYHGIH  60
EIALGVAQRL TYLHEELELQ VLLDEDVPKL FYFGLAREGP AAGRVKEKKN PEARRYYCIG  120
MHDSACVEAD EVGNEDSISL SLGLPCHHRS EVLNPKRTSA VRGHQRNPTS DDPSGVTVAL  180
HIGLPTTATK TSSTPTHVRY WIPTTQQILI GPTQFSCTVC NKTFTRFNNM QMHMWGHGSE  240
YRKGSESLRG SKAGSSMLRL PCYCCEEGCR NNINYPRSRP LKDFRTLQTH YKRKHGGKPF  300
ECRKCKKAFA VRGDWRTHEK NCGRLWFCIC GSDFKHKRSL KDHVRAFGNG HAPHSLGEER  360
GSDESEMVFL V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g06260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414314.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-113ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0L9TYQ10.0A0A0L9TYQ1_PHAAN; Uncharacterized protein
STRINGXP_007140559.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-112C2H2-like zinc finger protein