PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g05700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 1554aa    MW: 173414 Da    PI: 7.1966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g05700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006214381463123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      +kC    C +sF++k +L  H r+ +
  Vang06g05700.1 1438 HKCDldGCRMSFKTKAELLLHKRNlC 1463
                      799999****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.6E-144787IPR003349JmjN domain
PROSITE profilePS5118313.8694889IPR003349JmjN domain
PfamPF023754.3E-154982IPR003349JmjN domain
PROSITE profilePS5118434.077325494IPR003347JmjC domain
SMARTSM005589.2E-46325494IPR003347JmjC domain
SuperFamilySSF511973.57E-26326492No hitNo description
PfamPF023735.2E-36358477IPR003347JmjC domain
SMARTSM003551114381460IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.41E-714491498No hitNo description
SMARTSM003550.6714611485IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0514611490IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-514631489IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014631485IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-1014901515IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0314911520IPR007087Zinc finger, C2H2
SMARTSM003550.001614911515IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014931515IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-1015011551No hitNo description
Gene3DG3DSA:3.30.160.601.2E-1015161544IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.6615211547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.26315211552IPR007087Zinc finger, C2H2
PROSITE patternPS00028015231547IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1554 aa     Download sequence    Send to blast
LNRISPLLQL TLLLQIFNFP FCFFIFIFIF HVMGSVEIPN WLKELPLAPE FRPTDTEFAD  60
PIAYISKIEK QASNFGICKI IPPLPKPSKK YVFSNLNRSL LKCPDLSPDN SSLGVCNSLK  120
FGSGDGSSDG VSRAVFTTRH QELGQTQSVK KAKGTVQNPQ SGVHKQVWQS GEVYTLEQFE  180
SKSKSFARSL LGSVKDVSPL VIESMFWKAT LEKPIYVEYA NDVPGSAFEE SKGQFHYSHR  240
RLRKRTYYKS RLDSSDCKQT VMGCGRDTQI DDTKGASVQS DADKCLRMTK SVDTVSTFSS  300
NDDSQPFKEK SSDTGNDMQG TAGWKLSNSP WNLQVIARSS GSLTRFMPDD IPGVTSPMVY  360
IGMLFSWFAW HVEDHELHSM NFLHTGSSKT WYAVPGDYAF AFEEVIRTEG YGGNIDHLAA  420
LKLLGEKTTL LSPEVIVASG IPCCRLTQNP GEFVVTFPRA YHVGFSHGFN CGEAANFGTP  480
QWLSVAKEAA VRRAAMNYLP MLSHQQLLYL LTMSFISSVP RTLLPGVRSS RLRDRQKEER  540
EFLVKQAFIE DMVQENKLLS ILLGKEAAKR AVLWKAELLP DSSKGFQLPD LTSTTGTSVA  600
NMPNISSAKK SGHYLLDDEM SLYMDSLTNI DIGGDDLPYH FETDSGALAC VGCGILGFPF  660
MAVIQPTEKL TMELPDNHLI QVSSSDSTAG LHSSISRDLS FSELSSVKEM PDQSLNKCSK  720
CWNTSSKFFR PRIFCLGHAV QIVDMLQSKG GANVLIICHS DYQKIKAHAS EVAVEIHSAF  780
DYNEVPLDTA SPENLTLIDL AVDGEELDEC EDWTSTLGIN LRNWVHTRNN APSKQVPWTL  840
GTLFHDKCPA SNILALNWQS RRFRSKRSSH LAQTKSSHSI ERKKDDRLGG RINDSTADKK  900
LIQYSRRKFK SKHTCFPVAN MVCELQEKSQ KVSATLSANH DSCVSKTLQA EDLRTECALP  960
CASACTEMSS MHPEIQIAEM PISTKMIAAK SQPSNSIPDH VLMIEKLGAE IESQTMQESY  1020
VDRNNDLTLS HSKMHHNTNV SEICGKESQD CQYKKCSSTL SNAPDGNIEM IKKTEIAEAV  1080
IIDSHCNRLT LDDQGHQEYQ SNYKSNNEEA AVSTASMVNQ STLASVDGNV ESPNNNHISE  1140
RISSPIFLEK ANEEGIDSIS EMDKEPRINE SPISKHTPNE VCEVRRELYA SVDLQSNGIL  1200
DDEQQVTQGG KNSKREITHV STEQCCPSSG QCQIESVKKI NEDPVCSYAA KGENKSVTSI  1260
ELGCSEVSVE ACPSKDSCMQ FIPDKEKEMT NQSVNRIDEE LFSGSDTSTK DSFLSVQECS  1320
KIENEIYVTE NINEIKADLS QYKRGLESCE LATEVPRLNS ENKKKRKVER TGNRSNSDNF  1380
IRSPCEGLRP RAGKFAAGKS GVEINQVDKE NQVAKRARRS SEVLVLRKNK KDGVKKSHKC  1440
DLDGCRMSFK TKAELLLHKR NLCPHEGCGK KFSSHKYALL HQRVHDDERP LKCPWKGCSM  1500
SFKWAWARTE HIRVHTGEKP YHCKVEGCGL SFRFVSDFSR HRRKTGHHVK PPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-54308508137346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-54308508137346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
113621367KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g05700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414683.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A0S3SNQ80.0A0A0S3SNQ8_PHAAN; Uncharacterized protein
STRINGXP_007143729.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]