PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g05270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 403aa    MW: 46029.7 Da    PI: 6.8024
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g05270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-351001922103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+i++d++++++isws+ +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g++ ll++
  Vang06g05270.1 100 FLTKTYDIVDDPSTDHIISWSKGNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEMFLRGQRILLKS 185
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  Vang06g05270.1 186 IRRRKTN 192
                     ****976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3893183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5996189IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-3596189IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-19100123IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-30100189IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-19138150IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340139163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-19151163IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
LEHIYKVDNY SKFLLLPIIP VGVPPSIAII KKVKGKPISL FHVARSKLEL YLHSNMNPQG  60
RVKEEFLGES SSFYGGYDPP PIMIVPQPVE GLHETGPPPF LTKTYDIVDD PSTDHIISWS  120
KGNNSFIVWD PQAFSVTLLP RFFKHNNFSS FVRQLNTYGF KKVDPDKWEF ANEMFLRGQR  180
ILLKSIRRRK TNHQSHAMQQ AVDPCVEVGL FGLDGEVDRL KRDRQVLMAE LVKLRQQQQN  240
TRVHIQAMEG RLKRTEQKQQ QTMNFLARAM QNPNFVQQLV QQKELRKELK EAFSKKRCLD  300
QGPSNVVEVG ELACGEEYSS LVKLEAQVLD FEVPDIDLGL NLGEQIGSQK RMEGDYVQVE  360
SMDKDIDEVF WQDLLNEGIE EQGVMGVDVL AQQLGYLASR SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-259819127131Heat shock factor protein 1
5d5v_B7e-259819127131Heat shock factor protein 1
5d5v_D7e-259819127131Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512523.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-122HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0L9TZP40.0A0A0L9TZP4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SMT10.0A0A0S3SMT1_PHAAN; Uncharacterized protein
STRINGGLYMA20G28870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B