PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g03920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 497aa    MW: 54533.9 Da    PI: 10.1335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g03920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016385408123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+Cp+Cg +F ++  +  H ++ H
  Vang06g03920.1 385 YTCPKCGCVFETSQRFAAHVSSrH 408
                     9******************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808385413IPR007087Zinc finger, C2H2
PROSITE patternPS000280387408IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090057Biological Processroot radial pattern formation
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MSLNSFLSGS NPTTMPILKG SYSRETVHVA PPPIITNVKA SDLLKQQLLS VPALAKVLGG  60
TSSRSTARPQ PAPPLRLHRF LDDFPSETPQ KSTPQKAREA ATVTNKDTET EKKYDGRIHS  120
NPHKKNGPYT CPKCKGVFDT SQRISLNSFT TMANNFSTTL FPLSASNAVQ KSEALTVKGM  180
SQLGLSQRVK SLRKISLATK RRAVMFHGTE KGKGKEVLRA HFSDLSPTSL DVDGGDTESI  240
LRKSQIVREK LENAVCNTRI EENNKKAKEM LQAKLLSAFA SESDAAVGET SSTPQRGSFL  300
NHFAYPFPNR SSAHFSQTDT EVDKSIILCA TPLRVCLPGE SVYGGQKARN GSVGEAVEDV  360
CCSRGDESEY DGRMHSNPYK KNGPYTCPKC GCVFETSQRF AAHVSSRHYR YETKSERKKR  420
MMAKIRRRSL RLEWENGALS VVADDGSRRN SSVFAPAEVK IETESVVRLQ LAPPPGWPKI  480
TEAAGAVRIK LEPLDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g03920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413264.10.0PREDICTED: uncharacterized protein LOC108324849
TrEMBLA0A0S3SL330.0A0A0S3SL33_PHAAN; Uncharacterized protein (Fragment)
STRINGXP_007142642.11e-166(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1674277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.19e-19C2H2-like zinc finger protein