PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g02440.1
Common NameLR48_Vigan02g237100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 168aa    MW: 18490.3 Da    PI: 9.8379
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g02440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.2e-312101195
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+ ++     p++q++++ +v+k+FG++ ++++l+a+p ++r+++++sl+yeA  r+ +Pv+Gavg+++++++ql+q+
  Vang06g02440.1   2 SCNGCRVLRKGCSENCMLRHCLqlienPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWSGNWQLCQM 96 
                     6*********************************************************************************************9 PP

          DUF260  91 kaela 95 
                      +e +
  Vang06g02440.1  97 GVEKV 101
                     88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.8611107IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-27299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCMLR HCLQLIENPQ AQAHATLFVA KFFGRAALMS FLSAVPANQR  60
SALFQSLLYE AVGRTINPVN GAVGLLWSGN WQLCQMGVEK VLRGGAVLTP LPHFLSSVDV  120
HHQHHVTERA KKQRVGTPSQ ESETSYMGRK PQDSAPQSQR NLLTLFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g02440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-110AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414955.11e-119PREDICTED: LOB domain-containing protein 38-like isoform X1
SwissprotQ9SN231e-59LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0L9U0D71e-117A0A0L9U0D7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SM871e-117A0A0S3SM87_PHAAN; Uncharacterized protein
STRINGXP_007143107.11e-106(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-62LOB domain-containing protein 38
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]