PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g00440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 455aa    MW: 49106.4 Da    PI: 9.7792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g00440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  Vang06g00440.1 75 FICEVCNKGFQREQNLQLHRRGH 97
                    89*******************88 PP

2zf-C2H212.30.00052151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  Vang06g00440.1 151 WKCDKCSKKYAVQSDWKAHSKTC 173
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-77497No hitNo description
Gene3DG3DSA:3.30.160.604.8E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997597IPR007087Zinc finger, C2H2
PfamPF121712.1E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355130116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-5139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.29E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
LLQHMAASSS SASLFGFREE DQNQMKQQHS LTPSSSATPA APPPQKKKRN QPGTPYPDAE  60
VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLKQKTTKE PKRKVYLCPE  120
PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAQESARHP PNLGAAIGTH LFGTTANTIP LNLSQVASHI  240
SNIQDPNTQP TELLRLGGAA ARTSQFDHLL AAQMGASSSN STASLLKSFG SASSSSGSKS  300
EQHRPLVNAA NYGGGIFGGN VNEQGNSNLQ DLMNSFAVGG NSSIFEGGFE AYDHNSNNNN  360
REGKVHAMSG SSSIGGSDRL TRDFLGVGQI VRGMSGSGGV AQREQQQQQH GFNLSSLEAD  420
QRNNSNSNNN NNAAPSGQAF GGGGGNFQDL NMLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35147208364Zinc finger protein JACKDAW
5b3h_F2e-35147208364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g00440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414940.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_017414941.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_017414942.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A0S3SLJ50.0A0A0S3SLJ5_PHAAN; Uncharacterized protein
STRINGXP_007142834.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-105indeterminate(ID)-domain 5