PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0690s00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 380aa    MW: 42712.7 Da    PI: 7.6682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0690s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.4e-083453525
                      --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                      +C f+++ G C yG+rC++ H
  Vang0690s00020.1 34 ICTFYQK-GVCAYGSRCRYDH 53
                      7******.************* PP

2zf-CCCH18.92.6e-06146166526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ fa+ G C++G++C+ +Hg
  Vang0690s00020.1 146 ICS-FAAAGNCPRGEQCPHIHG 166
                       677.**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.382956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00243055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-43453IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-63453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.465141168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.59E-13202274No hitNo description
Gene3DG3DSA:3.30.40.103.5E-10203269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00515209269No hitNo description
SMARTSM001847.1E-7210267IPR001841Zinc finger, RING-type
PfamPF000973.2E-7210267IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.386210268IPR001841Zinc finger, RING-type
PROSITE patternPS005180234243IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS501039.911297322IPR000571Zinc finger, CCCH-type
SMARTSM003565.7297325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GVCAYGSRCR YDHIKASQAQ  60
SSIPSSSAIE HHTLVSDTGA FGNIITTSNG VGTAADLSLS SSPYILPSEP AWNHELVWNP  120
EIEYYEILGE DNVGQSIITS PSELSICSFA AAGNCPRGEQ CPHIHGDLCP TCGKHCLHPF  180
RPEEREEHMK TCESRHKYLD ALKRSQEIEC SVCLERVLSK PILAERKFGL LSECDHPFCI  240
SCIRNWRSSN PTLGMDVNST LRACPICRKL SYFVIPSVVW YSTTEEKQEI IDKYKEKLKS  300
IDCKHFDFGD GNCPFGSSCF YKIVVWGLNC VKTCISRWPC GAGSIATSRC CRWKYRNCKR  360
YQVVGFPFQH AFKMNGDTC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0690s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425409.10.0PREDICTED: zinc finger CCCH domain-containing protein 69
SwissprotE0X9N41e-146C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0S3SIW00.0A0A0S3SIW0_PHAAN; Uncharacterized protein
STRINGXP_007148855.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-136C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]