PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0659s00050.1
Common NameLR48_Vigan08g011400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 641aa    MW: 68818.5 Da    PI: 6.201
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0659s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52.1e-07279299526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  Vang0659s00050.1 279 PCPDFRK-GACRRGDMCEYAHG 299
                       8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.91E-149135No hitNo description
Gene3DG3DSA:1.25.40.202.9E-179137IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-1610137IPR020683Ankyrin repeat-containing domain
SMARTSM002482601040IPR002110Ankyrin repeat
PfamPF127962.1E-919123IPR020683Ankyrin repeat-containing domain
SMARTSM002480.535787IPR002110Ankyrin repeat
PROSITE profilePS5029716.89257158IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01592124IPR002110Ankyrin repeat
PROSITE profilePS5008811.1492127IPR002110Ankyrin repeat
SMARTSM003564.0E-6274300IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5279299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4307337IPR000571Zinc finger, CCCH-type
SMARTSM0035635309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MKTLTVNTED SFSSLLELAS NNDIEGFKVL LEKDPSAINE VGFWYGRQNG SKQIVLEHRT  60
PLMVAATYGS NDVLKLILMC PEADVNFACG ANKTTALHCA ASGGSANAVE TVKLLLSAGA  120
DASCMDAYGN RPVDVIVVPP KLQEMKPVLE ELLSDSASDG SIGGSIGELS VPVSVNSSSP  180
GSPNGLPYSP SASPPSPVVA KFTEAAIGSL SEKKEYPVDP SLPDIKNSIY ATDEFRMFSF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV STGSAVPSPR SSASAANVMD  360
MAAAMSLLPG SPSSVSSMSP SHFGQPMSPS ANGMSLSSGA WAQPNVPALH LPGSNLQSSR  420
LRSSLSARDI PPEDLNGMLD LDGHQHPLND LSCYLQPRPG TGSVSRSGRS KTLTPANLEE  480
LFSAEISSSP RYSDPAAASV FSPTHKSAVL NQFQQIQSML SPINTNLLSP KSVDHPLLQA  540
SFGVSSSGRM SPRINGDELG GKMRRSSSFE LKHNGEEPDL SWVQSLVKES PPEMMKERFA  600
SPLPTAPSAD GPNSNPQIES IDHSVLGAWL EQMQLDQLVV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0659s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494004.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3TJP90.0A0A1S3TJP9_VIGRR; zinc finger CCCH domain-containing protein 30-like
STRINGXP_007133821.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]