PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0658s00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 342aa    MW: 38620.2 Da    PI: 6.3611
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0658s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.34e-131862956
               AP2  9 dkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkklege 56
                      ++ +g++ AeIrd       +   r +lg+f+taeeAa+a+++a+++l+g+
  Vang0658s00060.1 18 RP-WGKYGAEIRDaR-----KptGRQWLGTFDTAEEAARAYDRAALQLRGA 62
                      56.**********55.....344789**********************995 PP

2AP2544.1e-17100150255
               AP2   2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g++ AeIrdp++      r +lg+f+taeeAa+a+++a+  l+g
  Vang0658s00060.1 100 KYRGVRKRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIGLRG 150
                       8********.**********97744...688*******************99988 PP

3AP226.51.6e-082522783056
               AP2  30 rfslgkfgtaeeAakaaiaarkklege 56 
                       r +lg+f+tae Aa+a+++a+ +l+g+
  Vang0658s00060.1 252 RQWLGTFDTAEAAARAYDRAAIELRGA 278
                       56**********************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.624869IPR001471AP2/ERF domain
SMARTSM003805.6E-221775IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-171770IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-231770IPR001471AP2/ERF domain
CDDcd000181.22E-231771No hitNo description
PfamPF008476.5E-71861IPR001471AP2/ERF domain
PROSITE profilePS5103223.314100158IPR001471AP2/ERF domain
CDDcd000188.95E-30100159No hitNo description
SMARTSM003802.1E-32100164IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-21100160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-29100160IPR001471AP2/ERF domain
PfamPF008474.4E-10100150IPR001471AP2/ERF domain
PRINTSPR003673.1E-10101112IPR001471AP2/ERF domain
PRINTSPR003673.1E-10124140IPR001471AP2/ERF domain
PROSITE profilePS5103214.236227285IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-11245287IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-16245287IPR001471AP2/ERF domain
SMARTSM003803.0E-7247290IPR001471AP2/ERF domain
PfamPF008472.1E-4254277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MMLDVNVTMH NTWQNLKRPW GKYGAEIRDA RKPTGRQWLG TFDTAEEAAR AYDRAALQLR  60
GALAILNFPD ASANSSTTGI GSSCSSQHKE VIEFEYLDDK YRGVRKRPWG KFGAEIRDPT  120
KPTGRQWLGT FDTAEEAARA YDRAAIGLRG ALAILNFPDE YYSHLPFLLS SNSSTVDSGS  180
SFARKEVIEF EYLDDKVQHH RSLRKFHQSH RHEFCQSILF MISQTLKFNF IFKREILPDE  240
EAMLDPTKPT GRQWLGTFDT AEAAARAYDR AAIELRGALA ILNFPDEYHS HLPFLSSSSS  300
SSASVIGSSS TAQGEVIEFE YLDDKVLEDL LESEEKRKKK E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-261032612114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0658s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-164AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408260.16e-65PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC59e-32ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0L9TBR41e-63A0A0L9TBR4_PHAAN; Uncharacterized protein
STRINGXP_007138829.11e-57(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-16ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]