PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0615s00090.1
Common NameLR48_Vigan09g121100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 382aa    MW: 41847 Da    PI: 8.8402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0615s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024143166123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++C+ Cg+ F  +++L++H+ + H
  Vang0615s00090.1 143 FPCTACGEIFQKPHLLETHQTLkH 166
                       89******************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.432143167IPR007087Zinc finger, C2H2
PROSITE patternPS000280145166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.108.7E-6169286IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.06E-14170380No hitNo description
Gene3DG3DSA:3.90.228.105.1E-6316380IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSIATFFN KFLYLLILLV HLGCFIFTTT AGGKKTPPSK KRKISPSSPS HPKFKTHKAL  60
SSSWHFIKHL LSTKSCKTPK TATSQLSPQS TAPTSTTSVS PAAAHSLISL TQPDPDRKQP  120
GSCPESDISA DTNLFFPLRN DIFPCTACGE IFQKPHLLET HQTLKHAVSD LSGSDPGHNI  180
VQIIFKSGWP ESKPSPTITR ILKIHNSPKI LAKFEEYREV VKSKAARNGS LTRRRDERCI  240
ADGNELMRFH CSTFLCDLGH SGDSSICSQQ FCNICGIIKS GFSPKLDGIA TLSTSWRAHV  300
AIPDDVEREF GFMNVKRAML VCRVIAGRVG SDSDDAEKAD GGFDSVMARS ETGVYTRLDE  360
EELLVFNPRA VLPCFVIVYT V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0615s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434956.10.0PREDICTED: uncharacterized protein LOC108341815
TrEMBLA0A0L9VCB60.0A0A0L9VCB6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S6980.0A0A0S3S698_PHAAN; Uncharacterized protein
STRINGXP_007146728.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]